R语言常用的软件包

> update.packages()                                                                                                              

--- Please select a CRAN mirror for use in this session ---

CRAN mirror 

  1: 0-Cloud [https]                     2: 0-Cloud                         

  3: Algeria [https]                     4: Algeria                         

  5: Argentina (La Plata)                6: Australia (Canberra) [https]    

  7: Australia (Canberra)                8: Australia (Melbourne) [https]   

  9: Australia (Melbourne)              10: Australia (Perth) [https]       

 11: Austria [https]                    12: Austria                         

 13: Belgium (Antwerp)                  14: Belgium (Ghent) [https]         

 15: Belgium (Ghent)                    16: Brazil (BA)                     

 17: Brazil (PR)                        18: Brazil (RJ) [https]             

 19: Brazil (RJ)                        20: Brazil (SP 1) [https]           

 21: Brazil (SP 1)                      22: Brazil (SP 2)                   

 23: Bulgaria [https]                   24: Bulgaria                        

 25: Canada (BC)                        26: Canada (MB) [https]             

 27: Canada (MB)                        28: Canada (NS)                     

 29: Canada (ON)                        30: Chile 1 [https]                 

 31: Chile 1                            32: Chile 2 [https]                 

 33: China (Beijing) [https]            34: China (Beijing)                 

 35: China (Hefei) [https]              36: China (Hefei)                   

 37: China (Lanzhou) [https]            38: China (Lanzhou)                 

 39: China (Xiamen)                     40: Colombia (Cali) [https]         

> update.packages(repos = "http://cran.us.r-project.org")                                                                        

BH :

 Version 1.58.0-1 installed in /usr/local/lib64/R/library 

 Version 1.62.0-1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

Cairo :

 Version 1.5-6 installed in /usr/local/lib64/R/library 

 Version 1.5-9 available at http://cran.us.r-project.org

Update (y/N/c)?  y

DBI :

 Version 0.3.1 installed in /usr/local/lib64/R/library 

 Version 0.5-1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

KernSmooth :

 Version 2.23-12 installed in /usr/local/lib64/R/library 

 Version 2.23-15 available at http://cran.us.r-project.org

Update (y/N/c)?  y

MASS :

 Version 7.3-31 installed in /usr/local/lib64/R/library 

 Version 7.3-45 available at http://cran.us.r-project.org

Update (y/N/c)?  y

Matrix :

 Version 1.1-3 installed in /usr/local/lib64/R/library 

 Version 1.2-8 available at http://cran.us.r-project.org

Update (y/N/c)?  y

R6 :

 Version 2.1.0 installed in /usr/local/lib64/R/library 

 Version 2.2.0 available at http://cran.us.r-project.org

Update (y/N/c)?  y

RSQLite :

 Version 1.0.0 installed in /usr/local/lib64/R/library 

 Version 1.1-2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

Rcpp :

 Version 0.12.0 installed in /usr/local/lib64/R/library 

 Version 0.12.9 available at http://cran.us.r-project.org

Update (y/N/c)?  y

SparseM :

 Version 1.6 installed in /usr/local/lib64/R/library 

 Version 1.74 available at http://cran.us.r-project.org

Update (y/N/c)?  y

VennDiagram :

 Version 1.6.9 installed in /usr/local/lib64/R/library 

 Version 1.6.17 available at http://cran.us.r-project.org

Update (y/N/c)?  y

XML :

 Version 3.98-1.1 installed in /usr/local/lib64/R/library 

 Version 3.98-1.5 available at http://cran.us.r-project.org

Update (y/N/c)?  y

ade4 :

 Version 1.7-2 installed in /usr/local/lib64/R/library 

 Version 1.7-5 available at http://cran.us.r-project.org

Update (y/N/c)?  y

adegenet :

 Version 2.0.0 installed in /usr/local/lib64/R/library 

 Version 2.0.1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

boot :

 Version 1.3-11 installed in /usr/local/lib64/R/library 

 Version 1.3-18 available at http://cran.us.r-project.org

Update (y/N/c)?  y

class :

 Version 7.3-10 installed in /usr/local/lib64/R/library 

 Version 7.3-14 available at http://cran.us.r-project.org

Update (y/N/c)?  y

cluster :

 Version 1.15.2 installed in /usr/local/lib64/R/library 

 Version 2.0.5 available at http://cran.us.r-project.org

Update (y/N/c)?  y

coda :

 Version 0.17-1 installed in /usr/local/lib64/R/library 

 Version 0.19-1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

codetools :

 Version 0.2-8 installed in /usr/local/lib64/R/library 

 Version 0.2-15 available at http://cran.us.r-project.org

Update (y/N/c)?  y

colorspace :

 Version 1.2-6 installed in /usr/local/lib64/R/library 

 Version 1.3-2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

curl :

 Version 0.9.2 installed in /usr/local/lib64/R/library 

 Version 2.3 available at http://cran.us.r-project.org

Update (y/N/c)?  y

deldir :

 Version 0.1-9 installed in /usr/local/lib64/R/library 

 Version 0.1-12 available at http://cran.us.r-project.org

Update (y/N/c)?  y

digest :

 Version 0.6.8 installed in /usr/local/lib64/R/library 

 Version 0.6.12 available at http://cran.us.r-project.org

Update (y/N/c)?  y

doParallel :

 Version 1.0.8 installed in /usr/local/lib64/R/library 

 Version 1.0.10 available at http://cran.us.r-project.org

Update (y/N/c)?  y

foreach :

 Version 1.4.2 installed in /usr/local/lib64/R/library 

 Version 1.4.3 available at http://cran.us.r-project.org

Update (y/N/c)?  y

foreign :

 Version 0.8-61 installed in /usr/local/lib64/R/library 

 Version 0.8-67 available at http://cran.us.r-project.org

Update (y/N/c)?  y

gdata :

 Version 2.13.3 installed in /usr/local/lib64/R/library 

 Version 2.17.0 available at http://cran.us.r-project.org

Update (y/N/c)?  y

ggplot2 :

 Version 1.0.1 installed in /usr/local/lib64/R/library 

 Version 2.2.1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

gplots :

 Version 2.17.0 installed in /usr/local/lib64/R/library 

 Version 3.0.1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

gtable :

 Version 0.1.2 installed in /usr/local/lib64/R/library 

 Version 0.2.0 available at http://cran.us.r-project.org

Update (y/N/c)?  y

gtools :

 Version 3.4.1 installed in /usr/local/lib64/R/library 

 Version 3.5.0 available at http://cran.us.r-project.org

Update (y/N/c)?  y

htmltools :

 Version 0.2.6 installed in /usr/local/lib64/R/library 

 Version 0.3.5 available at http://cran.us.r-project.org

Update (y/N/c)?  y

httpuv :

 Version 1.3.2 installed in /usr/local/lib64/R/library 

 Version 1.3.3 available at http://cran.us.r-project.org

Update (y/N/c)?  y

httr :

 Version 1.0.0 installed in /usr/local/lib64/R/library 

 Version 1.2.1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

irlba :

 Version 1.0.3 installed in /usr/local/lib64/R/library 

 Version 2.1.2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

iterators :

 Version 1.0.7 installed in /usr/local/lib64/R/library 

 Version 1.0.8 available at http://cran.us.r-project.org

Update (y/N/c)?  y

jsonlite :

 Version 0.9.16 installed in /usr/local/lib64/R/library 

 Version 1.2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

lattice :

 Version 0.20-29 installed in /usr/local/lib64/R/library 

 Version 0.20-34 available at http://cran.us.r-project.org

Update (y/N/c)?  y

lazyeval :

 Version 0.1.10 installed in /usr/local/lib64/R/library 

 Version 0.2.0 available at http://cran.us.r-project.org

Update (y/N/c)?  y

mgcv :

 Version 1.7-29 installed in /usr/local/lib64/R/library 

 Version 1.8-17 available at http://cran.us.r-project.org

Update (y/N/c)?  y

mime :

 Version 0.3 installed in /usr/local/lib64/R/library 

 Version 0.5 available at http://cran.us.r-project.org

Update (y/N/c)?  y

munsell :

 Version 0.4.2 installed in /usr/local/lib64/R/library 

 Version 0.4.3 available at http://cran.us.r-project.org

Update (y/N/c)?  y

nlme :

 Version 3.1-117 installed in /usr/local/lib64/R/library 

 Version 3.1-131 available at http://cran.us.r-project.org

Update (y/N/c)?  y

nnet :

 Version 7.3-8 installed in /usr/local/lib64/R/library 

 Version 7.3-12 available at http://cran.us.r-project.org

Update (y/N/c)?  y

pegas :

 Version 0.8-1 installed in /usr/local/lib64/R/library 

 Version 0.9 available at http://cran.us.r-project.org

Update (y/N/c)?  y

permute :

 Version 0.8-3 installed in /usr/local/lib64/R/library 

 Version 0.9-4 available at http://cran.us.r-project.org

Update (y/N/c)?  y

pheatmap :

 Version 0.7.7 installed in /usr/local/lib64/R/library 

 Version 1.0.8 available at http://cran.us.r-project.org

Update (y/N/c)?  y

plotrix :

 Version 3.5-11 installed in /usr/local/lib64/R/library 

 Version 3.6-4 available at http://cran.us.r-project.org

Update (y/N/c)?  y

plyr :

 Version 1.8.3 installed in /usr/local/lib64/R/library 

 Version 1.8.4 available at http://cran.us.r-project.org

Update (y/N/c)?  y

proto :

 Version 0.3-10 installed in /usr/local/lib64/R/library 

 Version 1.0.0 available at http://cran.us.r-project.org

Update (y/N/c)?  y

reshape2 :

 Version 1.4.1 installed in /usr/local/lib64/R/library 

 Version 1.4.2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

rpart :

 Version 4.1-8 installed in /usr/local/lib64/R/library 

 Version 4.1-10 available at http://cran.us.r-project.org

Update (y/N/c)?  y

scales :

 Version 0.2.5 installed in /usr/local/lib64/R/library 

 Version 0.4.1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

scatterplot3d :

 Version 0.3-35 installed in /usr/local/lib64/R/library 

 Version 0.3-38 available at http://cran.us.r-project.org

Update (y/N/c)?  y

seqinr :

 Version 3.1-3 installed in /usr/local/lib64/R/library 

 Version 3.3-3 available at http://cran.us.r-project.org

Update (y/N/c)?  y

shiny :

 Version 0.12.1 installed in /usr/local/lib64/R/library 

 Version 1.0.0 available at http://cran.us.r-project.org

Update (y/N/c)?  y

snow :

 Version 0.3-13 installed in /usr/local/lib64/R/library 

 Version 0.4-2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

snowfall :

 Version 1.84-6 installed in /usr/local/lib64/R/library 

 Version 1.84-6.1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

sp :

 Version 1.1-1 installed in /usr/local/lib64/R/library 

 Version 1.2-4 available at http://cran.us.r-project.org

Update (y/N/c)?  y

spatial :

 Version 7.3-8 installed in /usr/local/lib64/R/library 

 Version 7.3-11 available at http://cran.us.r-project.org

Update (y/N/c)?  y

spdep :

 Version 0.5-88 installed in /usr/local/lib64/R/library 

 Version 0.6-11 available at http://cran.us.r-project.org

Update (y/N/c)?  y

stringi :

 Version 0.5-5 installed in /usr/local/lib64/R/library 

 Version 1.1.2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

stringr :

 Version 1.0.0 installed in /usr/local/lib64/R/library 

 Version 1.2.0 available at http://cran.us.r-project.org

Update (y/N/c)?  y

survival :

 Version 2.37-7 installed in /usr/local/lib64/R/library 

 Version 2.40-1 available at http://cran.us.r-project.org

Update (y/N/c)?  y

vegan :

 Version 2.0-10 installed in /usr/local/lib64/R/library 

 Version 2.4-2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

xtable :

 Version 1.7-4 installed in /usr/local/lib64/R/library 

 Version 1.8-2 available at http://cran.us.r-project.org

Update (y/N/c)?  y

Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl,  :

  'lib = "/usr/local/lib64/R/library"' is not writable

Would you like to use a personal library instead?  (y/n) y

卸载R 软件包

> .libPaths()

[1] "/home/qzy/R/x86_64-unknown-linux-gnu-library/3.1"

[2] "/usr/local/lib64/R/library"  

> remove.packages("ape", lib="/usr/local/lib64/R/library")

Updating HTML index of packages in '.Library'

Making 'packages.html' ... done

查看软件包的版本 等帮助信息

> help(package="ggplot2")