小编给大家分享一下python mcscan运行报错怎么用，相信大部分人都还不怎么了解，因此分享这篇文章给大家参考一下，希望大家阅读完这篇文章后大有收获，下面让我们一起去了解一下吧！
python mcscan 运行报错
python 版本的mcscan分析最后绘制共线性绘图时报错如下：
运行命令如下：
/biosoft/miniconda/miniconda2/bin/python -m jcvi.graphics.karyotype --format=pdf --figsize=15x5 mcscan_seqid mcscan_layout
报错信息如下：
ms.boundary', 'scipy.spatial.kdtree']
12:29:39 [__init__] CACHEDIR=/home/manager/.cache/matplotlib
12:29:39 [font_manager] Using fontManager instance from /home/manager/.cache/matplotlib/fontList.json
12:29:40 [__init__] backend agg version v2.2
12:29:40 [base] Load file `mcscan_layout`
12:29:40 [base] Load file `HVI.bed`
12:29:41 [base] Load file `OSI.bed`
Traceback (most recent call last):
File "/biosoft/miniconda/miniconda2/lib/python2.7/runpy.py", line 174, in _run_module_as_main
"__main__", fname, loader, pkg_name)
File "/biosoft/miniconda/miniconda2/lib/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File "/biosoft/miniconda/miniconda2/lib/python2.7/site-packages/jcvi/graphics/karyotype.py", line 330, in <module>
main()
File "/biosoft/miniconda/miniconda2/lib/python2.7/site-packages/jcvi/graphics/karyotype.py", line 318, in main
Karyotype(fig, root, seqidsfile, layoutfile)
File "/biosoft/miniconda/miniconda2/lib/python2.7/site-packages/jcvi/graphics/karyotype.py", line 269, in __init__
layout = Layout(layoutfile, generank=generank)
File "/biosoft/miniconda/miniconda2/lib/python2.7/site-packages/jcvi/graphics/karyotype.py", line 87, in __init__
self.assign_colors()
File "/biosoft/miniconda/miniconda2/lib/python2.7/site-packages/jcvi/graphics/base.py", line 97, in assign_colors
self.assign_array("color", colorset)
File "/biosoft/miniconda/miniconda2/lib/python2.7/site-packages/jcvi/graphics/base.py", line 91, in assign_array
if not getattr(x, attrib):
AttributeError: 'LayoutLine' object has no attribute 'color'这是由于输入第二个配置文件多了一个空行如下，删除空行运行成功； 所以最后不要有空行。
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