这篇文章主要介绍“qiime2报错couldn't connect to display "localhost:12.0"怎么解决”,在日常操作中,相信很多人在qiime2报错couldn't connect to display "localhost:12.0"怎么解决问题上存在疑惑,小编查阅了各式资料,整理出简单好用的操作方法,希望对大家解答”qiime2报错couldn't connect to display "localhost:12.0"怎么解决”的疑惑有所帮助!接下来,请跟着小编一起来学习吧!
qiime2 couldn't connect to display "localhost:12.0"
Traceback (most recent call last):
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/q2cli/commands.py", line 329, in __call__
results = action(**arguments)
File "<decorator-gen-545>", line 2, in summarize
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/action.py", line 245, in bound_callable
output_types, provenance)
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/action.py", line 452, in _callable_executor_
ret_val = self._callable(output_dir=temp_dir, **view_args)
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/q2_demux/_summarize/_visualizer.py", line 177, in summarize
ax = sns.distplot(result, kde=False, color='black')
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/seaborn/distributions.py", line 167, in distplot
ax = plt.gca()
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/matplotlib/pyplot.py", line 879, in gca
return gcf().gca(**kwargs)
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/matplotlib/pyplot.py", line 611, in gcf
return figure()
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/matplotlib/pyplot.py", line 546, in figure
**kwargs)
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/matplotlib/backend_bases.py", line 3358, in new_figure_manager
return cls.new_figure_manager_given_figure(num, fig)
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/site-packages/matplotlib/backends/_backend_tk.py", line 888, in new_figure_manager_given_figure
window = tk.Tk(className="matplotlib")
File "/share/work/biosoft/conda/Miniconda3.8/envs/qiime2-2020.8/lib/python3.6/tkinter/__init__.py", line 2023, in __init__
self.tk = _tkinter.create(screenName, baseName, className, interactive, wantobjects, useTk, sync, use)
_tkinter.TclError: couldn't connect to display "localhost:12.0"
Plugin error from demux:
couldn't connect to display "localhost:10.0"
Debug info has been saved to /tmp/qiime2-q2cli-err-cpq2ii3g.log
【出现问题的原因】 问题在于,您使用的是一个交互式后端,它试图为您创建图形窗口,但由于您断开了启动模拟时可用的x服务器,所以失败了。
【解决方法】
使用非交互式后端(请参见后端?)比如:Agg(用于Png格式,PDF, SVG或PS。在生成图形的脚本中,只需在import matplotlib.pyplot as plt之前调用matplotlib.use()即可,具体如下:
将导入更改为
import matplotlib
matplotlib.use('AGG')#或者PDF, SVG或PS
import matplotlib.pyplot as plt
永久解决办法:
mkdir -p $HOME/.config/matplotlib/
echo"backend: Agg" >> $HOME/.config/matplotlib/matplotlibrc
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