R语言是怎么做方差分解的

datatotal<-read.table("datasetmultifunctionality.txt", header=T, sep="\t")
colnames(datatotal)

有的是常规的标准化

有的是log转化

常规的标准化开头提到的推文里介绍了方差分解必须用标准化后的数据，但是有的log转化是什么意思呢？

#####logtransformation moments
datatotal[,c(12,13,16,17)]<-log(datatotal[,c(12,13,16,17)])
datatotal[,14]<-log(datatotal[,14]-min(datatotal[,14])+1)
datatotal[,15]<-log(datatotal[,15]-min(datatotal[,15])+1)
datatotal[,18]<-log(datatotal[,18]-min(datatotal[,18])+1)
datatotal[,19]<-log(datatotal[,19]-min(datatotal[,19])+1)

#####Zscorring environmental variables
datatotal$ELEVATION<-(datatotal$ELEVATION-mean(datatotal$ELEVATION))/sd(datatotal$ELEVATION)
datatotal$LAT<-(datatotal$LAT-mean(datatotal$LAT))/sd(datatotal$LAT)
datatotal$SINLONG<-(datatotal$SINLONG-mean(datatotal$SINLONG))/sd(datatotal$SINLONG)
datatotal$COSLONG<-(datatotal$COSLONG-mean(datatotal$COSLONG))/sd(datatotal$COSLONG)
datatotal$SLO<-(datatotal$SLO-mean(datatotal$SLO))/sd(datatotal$SLO)
datatotal$ARIDITY<-(datatotal$ARIDITY-mean(datatotal$ARIDITY))/sd(datatotal$ARIDITY)
datatotal$SAND<-(datatotal$SAND-mean(datatotal$SAND))/sd(datatotal$SAND)
datatotal$PH<-(datatotal$PH-mean(datatotal$PH))/sd(datatotal$PH)
datatotal$SR<-(datatotal$SR-mean(datatotal$SR))/sd(datatotal$SR)

#####Zscorring moments
datatotal$CWM_logH<-(datatotal$CWM_logH-mean(datatotal$CWM_logH))/sd(datatotal$CWM_logH)
datatotal$CWV_logH<-(datatotal$CWV_logH-mean(datatotal$CWV_logH))/sd(datatotal$CWV_logH)
datatotal$CWS_logH<-(datatotal$CWS_logH-mean(datatotal$CWS_logH))/sd(datatotal$CWS_logH)
datatotal$CWK_logH<-(datatotal$CWK_logH-mean(datatotal$CWK_logH))/sd(datatotal$CWK_logH)
datatotal$CWM_logSLA<-(datatotal$CWM_logSLA-mean(datatotal$CWM_logSLA))/sd(datatotal$CWM_logSLA)
datatotal$CWV_logSLA<-(datatotal$CWV_logSLA-mean(datatotal$CWV_logSLA))/sd(datatotal$CWV_logSLA)
datatotal$CWS_logSLA<-(datatotal$CWS_logSLA-mean(datatotal$CWS_logSLA))/sd(datatotal$CWS_logSLA)
datatotal$CWK_logSLA<-(datatotal$CWK_logSLA-mean(datatotal$CWK_logSLA))/sd(datatotal$CWK_logSLA)

#####Zscorring ecosystem functions

datatotal$BGL<-(datatotal$BGL-mean(datatotal$BGL))/sd(datatotal$BGL)
datatotal$FOS<-(datatotal$FOS-mean(datatotal$FOS))/sd(datatotal$FOS)
datatotal$AMP<-(datatotal$AMP-mean(datatotal$AMP))/sd(datatotal$AMP)
datatotal$NTR<-(datatotal$NTR-mean(datatotal$NTR))/sd(datatotal$NTR)
datatotal$I.NDVI<-(datatotal$I.NDVI-mean(datatotal$I.NDVI))/sd(datatotal$I.NDVI)


#####Calculating indices of multifunctionality (M5: 5 functions)
colnames(datatotal)
M5<-rowMeans(datatotal[,c(20,21,22,23,24)])
datatotal<-cbind(datatotal,M5)


#####Log-transfromation of multifunctionality
logM5<-log(datatotal$M5-min(datatotal$M5)+1)
datatotal<-cbind(datatotal,logM5)

代码是

library(MuMIn)
mod12<-lm(logM5 ~ LAT + SINLONG + COSLONG +   
            ARIDITY + SLO + SAND + PH + I(PH^2) + ELEVATION+
            CWM_logSLA + I(CWM_logSLA^2)+ CWV_logSLA + I(CWV_logSLA^2) +  CWS_logSLA + CWK_logSLA + I(CWK_logSLA^2) +
            CWM_logH + I(CWM_logH^2)+ CWV_logH + I(CWV_logH^2) +  CWS_logH + CWK_logH + I(CWK_logH^2) +
            SR
          , data=datatotal)
# 这一步要好长时间
dd12<-dredge(mod12, subset = ~ LAT & SINLONG & COSLONG & ARIDITY & SLO & SAND & PH &SR & ELEVATION &   
               dc(CWM_logSLA,I(CWM_logSLA^2)) & dc(CWV_logSLA,I(CWV_logSLA^2)) & dc(CWK_logSLA,I(CWK_logSLA^2)) 
             & dc(CWM_logH,I(CWM_logH^2)) & dc(CWV_logH,I(CWV_logH^2)) & dc(CWK_logH,I(CWK_logH^2)), 
             options(na.action = "na.fail"))

subset(dd12,delta<2)
de12<-model.avg(dd12, subset = delta < 2)
summary(de12)

这一步得到的数据就是论文中 的figure4a

 

下期推文介绍如何利用得到的数据画图

这里遇到的问题是：

• 1、 模型里有的变量会用     I()函数包起来，这个函数起到什么作用呢？
• 2、模型选择那一步用到了     dc()函数，这个函数又起到什么作用呢？